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Fit with theory covmat with n3fit

Emanuele Roberto Nocera requested to merge fix_thcovmat_fit into master

Created by: andreab1997

This will make possible to run a NNPDF4.0 fit including theory_covariance matrix

Edit: it also modifies the replica generation (make_replica) to utilize the covmat (with theory errors and multiplicative uncertainties if the proper flags are utilized)

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