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add final covmat regularisation procedure and a stat estimator table

Emanuele Roberto Nocera requested to merge covmat_reg_table into master

Created by: wilsonmr

added the final recommendation for covmat reg to calcutils, added functions which regularize both covmat and sqrt of covmat (lower triangle/systematics file)

Also added a preliminary table for comparing the affect of different thresholds on the difference between the chi2 and the expected chi2 in units of the standard deviation of the chi2.

To do:

closes #584 (closed)

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